Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
STAG1

Cell type

Cell type Class
Others
Cell type
CHM13hTERT
NA
NA

Attributes by original data submitter

Sample

source_name
cell line
tissue
cell line
cell line
CHM13
cell type
hydatidiform mole
replicate
3
chip antibody
Bethyl, A302-579A
geo_loc_name
missing
collection_date
missing

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
39709932
Reads aligned (%)
95.9
Duplicates removed (%)
5.6
Number of peaks
35428 (qval < 1E-05)

hg19

Number of total reads
39709932
Reads aligned (%)
95.3
Duplicates removed (%)
5.7
Number of peaks
34269 (qval < 1E-05)

Base call quality data from DBCLS SRA